CA2293222A1 - System for facilitating drug discovery data and method thereof - Google Patents

System for facilitating drug discovery data and method thereof Download PDF

Info

Publication number
CA2293222A1
CA2293222A1 CA002293222A CA2293222A CA2293222A1 CA 2293222 A1 CA2293222 A1 CA 2293222A1 CA 002293222 A CA002293222 A CA 002293222A CA 2293222 A CA2293222 A CA 2293222A CA 2293222 A1 CA2293222 A1 CA 2293222A1
Authority
CA
Canada
Prior art keywords
drug discovery
computers
discovery research
discovery data
facilitating drug
Prior art date
Legal status (The legal status is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the status listed.)
Granted
Application number
CA002293222A
Other languages
French (fr)
Other versions
CA2293222C (en
Inventor
Manuel J. Glynias
Michael C. Dickson
Michal S. Soclof
Daniel A. Forsch
Joanne M. O'dell
Current Assignee (The listed assignees may be inaccurate. Google has not performed a legal analysis and makes no representation or warranty as to the accuracy of the list.)
Sygnis Pharma AG
Original Assignee
Individual
Priority date (The priority date is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the date listed.)
Filing date
Publication date
Application filed by Individual filed Critical Individual
Publication of CA2293222A1 publication Critical patent/CA2293222A1/en
Application granted granted Critical
Publication of CA2293222C publication Critical patent/CA2293222C/en
Anticipated expiration legal-status Critical
Expired - Fee Related legal-status Critical Current

Links

Classifications

    • GPHYSICS
    • G06COMPUTING; CALCULATING OR COUNTING
    • G06FELECTRIC DIGITAL DATA PROCESSING
    • G06F16/00Information retrieval; Database structures therefor; File system structures therefor
    • G06F16/20Information retrieval; Database structures therefor; File system structures therefor of structured data, e.g. relational data
    • G06F16/25Integrating or interfacing systems involving database management systems
    • GPHYSICS
    • G16INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
    • G16BBIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
    • G16B50/00ICT programming tools or database systems specially adapted for bioinformatics
    • G16B50/20Heterogeneous data integration
    • GPHYSICS
    • G16INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
    • G16BBIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
    • G16B50/00ICT programming tools or database systems specially adapted for bioinformatics
    • G16B50/30Data warehousing; Computing architectures
    • GPHYSICS
    • G16INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
    • G16BBIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
    • G16B50/00ICT programming tools or database systems specially adapted for bioinformatics
    • G16B50/40Encryption of genetic data
    • GPHYSICS
    • G16INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
    • G16BBIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
    • G16B50/00ICT programming tools or database systems specially adapted for bioinformatics
    • GPHYSICS
    • G16INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
    • G16CCOMPUTATIONAL CHEMISTRY; CHEMOINFORMATICS; COMPUTATIONAL MATERIALS SCIENCE
    • G16C20/00Chemoinformatics, i.e. ICT specially adapted for the handling of physicochemical or structural data of chemical particles, elements, compounds or mixtures
    • G16C20/90Programming languages; Computing architectures; Database systems; Data warehousing

Abstract

A drug discovery research system (100) which includes a plurality of computers (110 and 112). The drug discovery research system (100) provides for at least one of the plurality of computers to run a multi-platform object oriented programming code, and at least one of the plurality of computers to store drug discovery related data. The system (100) has a network architecture (300) interconnecting the plurality of computers (110, 112). The network architecture (300) allows objects to transparently communicate with each other. The drug discovery research system (100) provides for integrating and organizing data to facilitate drug discovery research.
CA002293222A 1997-06-11 1998-06-10 System for facilitating drug discovery data and method thereof Expired - Fee Related CA2293222C (en)

Applications Claiming Priority (3)

Application Number Priority Date Filing Date Title
US08/873,217 1997-06-11
US08/873,217 US6125383A (en) 1997-06-11 1997-06-11 Research system using multi-platform object oriented program language for providing objects at runtime for creating and manipulating biological or chemical data
PCT/US1998/011981 WO1998057263A1 (en) 1997-06-11 1998-06-10 System for facilitating drug discovery data and method thereof

Publications (2)

Publication Number Publication Date
CA2293222A1 true CA2293222A1 (en) 1998-12-17
CA2293222C CA2293222C (en) 2002-11-26

Family

ID=25361202

Family Applications (1)

Application Number Title Priority Date Filing Date
CA002293222A Expired - Fee Related CA2293222C (en) 1997-06-11 1998-06-10 System for facilitating drug discovery data and method thereof

Country Status (5)

Country Link
US (2) US6125383A (en)
EP (1) EP0988593A1 (en)
AU (1) AU7832498A (en)
CA (1) CA2293222C (en)
WO (1) WO1998057263A1 (en)

Families Citing this family (87)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
US8236500B2 (en) * 1997-10-23 2012-08-07 The United States Of America, As Represented By The Department Of Veterans Affairs Promoter variants of the alpha-7 nicotinic acetylcholine receptor
US6745168B1 (en) * 1998-01-28 2004-06-01 Fujitsu Limited Intention achievement information processing apparatus
US6529911B1 (en) * 1998-05-27 2003-03-04 Thomas C. Mielenhausen Data processing system and method for organizing, analyzing, recording, storing and reporting research results
US6377973B2 (en) * 1998-09-30 2002-04-23 Emrys Technologies, Ltd. Event management in a system with application and graphical user interface processing adapted to display predefined graphical elements resides separately on server and client machine
US6385661B1 (en) * 1998-10-19 2002-05-07 Recursion Software, Inc. System and method for dynamic generation of remote proxies
US6393605B1 (en) * 1998-11-18 2002-05-21 Siebel Systems, Inc. Apparatus and system for efficient delivery and deployment of an application
US6637020B1 (en) * 1998-12-03 2003-10-21 International Business Machines Corporation Creating applications within data processing systems by combining program components dynamically
EP1016982A1 (en) * 1998-12-30 2000-07-05 LION Bioscience AG Method and apparatus of processing semistructured textual data
US6323852B1 (en) * 1999-01-04 2001-11-27 Leadscope, Inc. Method of analyzing organizing and visualizing chemical data with feature hierarchy
US6473759B1 (en) * 1999-01-12 2002-10-29 International Business Machines Corporation Method and system for accessing java applications
US7912689B1 (en) * 1999-02-11 2011-03-22 Cambridgesoft Corporation Enhancing structure diagram generation through use of symmetry
US7295931B1 (en) * 1999-02-18 2007-11-13 Cambridgesoft Corporation Deriving fixed bond information
JP4146983B2 (en) * 1999-02-26 2008-09-10 インターナショナル・ビジネス・マシーンズ・コーポレーション Process method and data processing system for calling method of server object
US7882501B1 (en) * 1999-08-13 2011-02-01 Oracle America, Inc. System and method for enabling dynamic modifed class reloading in an application server environment
US6289382B1 (en) * 1999-08-31 2001-09-11 Andersen Consulting, Llp System, method and article of manufacture for a globally addressable interface in a communication services patterns environment
US7424543B2 (en) * 1999-09-08 2008-09-09 Rice Iii James L System and method of permissive data flow and application transfer
US6947965B2 (en) * 1999-11-30 2005-09-20 Recursion Software, Inc. System and method for communications in a distributed computing environment
US6629128B1 (en) * 1999-11-30 2003-09-30 Recursion Software, Inc. System and method for distributed processing in a computer network
US6678743B1 (en) 1999-11-30 2004-01-13 Recursion Software, Inc. Method for moving objects in a distributed computing environment
US20050257128A1 (en) * 1999-12-09 2005-11-17 Simple.Com. WWW browser configured to provide a windowed content manifestation environment
US20030097222A1 (en) * 2000-01-25 2003-05-22 Craford David M. Method, system, and computer software for providing a genomic web portal
WO2001065379A1 (en) * 2000-02-28 2001-09-07 Pictureiq Corporation Techniques for embedding custom user interface controls inside internet content
US6907350B2 (en) * 2000-03-13 2005-06-14 Chugai Seiyaku Kabushiki Kaisha Method, system and apparatus for handling information on chemical substances
US7216113B1 (en) 2000-03-24 2007-05-08 Symyx Technologies, Inc. Remote Execution of Materials Library Designs
US7356419B1 (en) 2000-05-05 2008-04-08 Cambridgesoft Corporation Deriving product information
US7272509B1 (en) 2000-05-05 2007-09-18 Cambridgesoft Corporation Managing product information
US7031976B1 (en) * 2000-05-26 2006-04-18 Sprint Communications Company L.P. Computer framework and method for isolating a business component from specific implementations of a datastore
WO2002017190A1 (en) * 2000-08-22 2002-02-28 Varro Technologies, Inc. Method and system for sharing biological information
WO2002025570A2 (en) * 2000-09-07 2002-03-28 Arrayex, Inc. Systems, methods and computer program products for processing genomic data in an object-oriented environment
WO2002023308A2 (en) * 2000-09-12 2002-03-21 Viaken Systems, Inc. Techniques for providing and obtaining research and development information technology on remote computing resources
WO2002039486A2 (en) * 2000-11-09 2002-05-16 National Center For Genome Resources Integrated system for biological information
US6816869B2 (en) * 2000-11-17 2004-11-09 Microsoft Corporation Mapping database users to operating system users in a computer schema
US20020156756A1 (en) * 2000-12-06 2002-10-24 Biosentients, Inc. Intelligent molecular object data structure and method for application in heterogeneous data environments with high data density and dynamic application needs
US20100223295A1 (en) * 2000-12-06 2010-09-02 Io Informatics, Inc. Applied Semantic Knowledgebases and Applications Thereof
US7028035B1 (en) * 2000-12-08 2006-04-11 Hewlett-Packard Development Company, L.P. Method and system of typing resources in a distributed system
US7085773B2 (en) * 2001-01-05 2006-08-01 Symyx Technologies, Inc. Laboratory database system and methods for combinatorial materials research
US20040125130A1 (en) * 2001-02-26 2004-07-01 Andrea Flamini Techniques for embedding custom user interface controls inside internet content
US7647373B2 (en) * 2001-03-13 2010-01-12 Eplus Capital, Inc. System and process for network collaboration through embedded annotation and rendering instructions
US6754659B2 (en) * 2001-04-09 2004-06-22 International Business Machines Corporation Method for running existing java beans in an enterprise java bean environment
US7370272B2 (en) * 2001-04-14 2008-05-06 Siebel Systems, Inc. Data adapter
US7257820B2 (en) * 2001-04-14 2007-08-14 Siebel Systems, Inc. Method and system for using integration objects with enterprise business applications
JP2002324037A (en) * 2001-04-24 2002-11-08 Fujitsu Ltd Coordinated display program
CA2447070A1 (en) * 2001-05-22 2002-11-28 Entelos, Inc. Methods for predicting the activities of cellular constituents
US7428752B2 (en) * 2001-06-01 2008-09-23 Applications In Internet Time, Llc Secure data accessing system and method
US20020194201A1 (en) * 2001-06-05 2002-12-19 Wilbanks John Thompson Systems, methods and computer program products for integrating biological/chemical databases to create an ontology network
US20020194154A1 (en) * 2001-06-05 2002-12-19 Levy Joshua Lerner Systems, methods and computer program products for integrating biological/chemical databases using aliases
AU2002316267A1 (en) * 2001-06-14 2003-01-02 Rigel Pharmaceuticals, Inc. Multidimensional biodata integration and relationship inference
US20030009099A1 (en) * 2001-07-09 2003-01-09 Lett Gregory Scott System and method for modeling biological systems
US7108975B2 (en) * 2001-09-21 2006-09-19 Regents Of The University Of Michigan Atlastin
US7582425B2 (en) 2001-09-21 2009-09-01 The Regents Of The University Of Michigan Atlastin
US7685562B2 (en) * 2001-09-28 2010-03-23 Siebel Systems, Inc. Method and code generator for integrating different enterprise business applications
US20030093433A1 (en) * 2001-11-14 2003-05-15 Exegesys, Inc. Method and system for software application development and customizible runtime environment
FI113709B (en) * 2001-12-10 2004-05-31 Nokia Corp A method for providing remote device functionality in an embedded environment
US9418204B2 (en) * 2002-01-28 2016-08-16 Samsung Electronics Co., Ltd Bioinformatics system architecture with data and process integration
US20030177143A1 (en) * 2002-01-28 2003-09-18 Steve Gardner Modular bioinformatics platform
US7225183B2 (en) * 2002-01-28 2007-05-29 Ipxl, Inc. Ontology-based information management system and method
US7016919B2 (en) * 2002-03-29 2006-03-21 Agilent Technologies, Inc. Enterprise framework and applications supporting meta-data and data traceability requirements
EP1495432A2 (en) * 2002-04-10 2005-01-12 TransTech Pharma Inc. System and method for data analysis, manipulation, and visualization
US20030225748A1 (en) * 2002-05-29 2003-12-04 Tilmann Haeberle Project knowledge management
AU2003240558A1 (en) * 2002-06-06 2003-12-22 Vizx Labs, Llc Biological results evaluation method
JP4001512B2 (en) * 2002-06-25 2007-10-31 富士通株式会社 Client side data analysis program and server side data analysis program
US7565443B2 (en) * 2002-12-13 2009-07-21 Sap Ag Common persistence layer
US20040172614A1 (en) * 2003-02-28 2004-09-02 Bea Systems, Inc. Dynamic code generation method
US7472400B2 (en) * 2003-02-28 2008-12-30 Bea Systems, Inc. Method for dynamically generating a wrapper class
US7472401B2 (en) * 2003-02-28 2008-12-30 Bea Systems, Inc. Computer product for a dynamically generated wrapper class
US7536675B2 (en) * 2003-02-28 2009-05-19 Bea Systems, Inc. Dynamic code generation system
US20050097440A1 (en) * 2003-11-04 2005-05-05 Richard Lusk Method and system for collaboration
JP2005258952A (en) * 2004-03-12 2005-09-22 Fujitsu Ltd Service system based on sensibility information
US20050234964A1 (en) * 2004-04-19 2005-10-20 Batra Virinder M System and method for creating dynamic workflows using web service signature matching
JP4547990B2 (en) * 2004-05-25 2010-09-22 富士ゼロックス株式会社 Information processing apparatus and information processing program
US8881099B2 (en) * 2004-09-10 2014-11-04 Oracle International Corporation Dynamic generation of wrapper classes to implement call-by-value semantics
AU2005301055A1 (en) * 2004-11-04 2006-05-11 Topeer Corporation System and method for creating a secure trusted social network
US7634771B2 (en) * 2005-04-29 2009-12-15 Sap (Ag) Object generation in packages
US7669181B2 (en) * 2005-04-29 2010-02-23 Sap (Ag) Client interfaces for packages
US7587705B2 (en) * 2005-04-29 2009-09-08 Sap (Ag) Calls and return calls using client interfaces
CN100342379C (en) * 2005-05-25 2007-10-10 北京四方继保自动化股份有限公司 Method of implementing IEC 61850 information indirect access real-time database
US7647290B2 (en) * 2006-11-06 2010-01-12 Hitachi Software Engineering Co., Ltd. Method for performing bioinformatics analysis program and bioinformatics analysis platform
US8930178B2 (en) 2007-01-04 2015-01-06 Children's Hospital Medical Center Processing text with domain-specific spreading activation methods
US8375086B2 (en) * 2007-05-31 2013-02-12 International Business Machines Corporation Shared state manager and system and method for collaboration
US8548997B1 (en) * 2009-04-08 2013-10-01 Jianqing Wu Discovery information management system
US8271427B1 (en) * 2010-01-13 2012-09-18 Wisconsin Alumni Research Foundation Computer database system for single molecule data management and analysis
US8898149B2 (en) 2011-05-06 2014-11-25 The Translational Genomics Research Institute Biological data structure having multi-lateral, multi-scalar, and multi-dimensional relationships between molecular features and other data
WO2015168295A1 (en) * 2014-04-29 2015-11-05 Schrodinger, Inc. Collaborative drug discovery system
USD815145S1 (en) 2016-03-25 2018-04-10 Illumina, Inc. Display screen with application icon
USD815146S1 (en) * 2016-03-25 2018-04-10 Illimina, Inc. Display screen with application icon
EP4214716A1 (en) 2020-12-03 2023-07-26 Novartis AG Collaboration platform for enabling collaboration on data analysis across multiple disparate databases
US20220358390A1 (en) * 2021-05-04 2022-11-10 International Business Machines Corporation Communication coordination and node synchronization for enhanced quantum circuit operation employing a hybrid classical/quantum system

Family Cites Families (23)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
JP3055970B2 (en) * 1991-06-20 2000-06-26 富士通株式会社 Method and apparatus for implementing interface between object-oriented languages
JPH06236284A (en) * 1991-10-21 1994-08-23 Intel Corp Method for preservation and restoration of computer-system processing state and computer system
US5557518A (en) * 1994-04-28 1996-09-17 Citibank, N.A. Trusted agents for open electronic commerce
JP3489123B2 (en) * 1992-04-15 2004-01-19 株式会社日立製作所 Application binding method
US5581760A (en) * 1992-07-06 1996-12-03 Microsoft Corporation Method and system for referring to and binding to objects using identifier objects
US5329619A (en) * 1992-10-30 1994-07-12 Software Ag Cooperative processing interface and communication broker for heterogeneous computing environments
US5544302A (en) * 1993-06-03 1996-08-06 Taligent, Inc. Object-oriented framework for creating and using container objects with built-in properties
JP3365576B2 (en) * 1993-06-14 2003-01-14 インターナショナル・ビジネス・マシーンズ・コーポレーション Object execution method and apparatus
US5473777A (en) * 1993-07-19 1995-12-05 Moeller; Christopher P. Wrapper for enabling an object otented application to maintain virtual memory using procedural function calls
EP0746816B1 (en) * 1993-08-03 2001-10-24 Sun Microsystems, Inc. Flexible multi-platform partitioning for computer applications
US5517645A (en) * 1993-11-05 1996-05-14 Microsoft Corporation Method and system for interfacing components via aggregate components formed by aggregating the components each with an instance of a component manager
US5537526A (en) * 1993-11-12 1996-07-16 Taugent, Inc. Method and apparatus for processing a display document utilizing a system level document framework
US5832219A (en) * 1994-02-08 1998-11-03 Object Technology Licensing Corp. Distributed object networking service
US5608900A (en) * 1994-06-21 1997-03-04 Internationl Business Machines Corp. Generation and storage of connections between objects in a computer network
US5491820A (en) * 1994-11-10 1996-02-13 At&T Corporation Distributed, intermittently connected, object-oriented database and management system
US5758351A (en) * 1995-03-01 1998-05-26 Sterling Software, Inc. System and method for the creation and use of surrogate information system objects
US5745703A (en) * 1995-07-18 1998-04-28 Nec Research Institute, Inc. Transmission of higher-order objects across a network of heterogeneous machines
US5692073A (en) * 1996-05-03 1997-11-25 Xerox Corporation Formless forms and paper web using a reference-based mark extraction technique
US5778368A (en) * 1996-05-03 1998-07-07 Telogy Networks, Inc. Real-time embedded software respository with attribute searching apparatus and method
US5781732A (en) * 1996-06-20 1998-07-14 Object Technology Licensing Corp. Framework for constructing shared documents that can be collaboratively accessed by multiple users
US6044224A (en) * 1996-06-26 2000-03-28 Sun Microsystems, Inc. Mechanism for dynamically associating a service dependent representation with objects at run time
US5809507A (en) * 1996-07-01 1998-09-15 Sun Microsystems, Inc. Method and apparatus for storing persistent objects on a distributed object network using a marshaling framework
US5854750A (en) * 1996-09-03 1998-12-29 Insession, Inc. System and method for processing transactions in an environment containing a number of object oriented applications

Also Published As

Publication number Publication date
US6453333B1 (en) 2002-09-17
US6125383A (en) 2000-09-26
CA2293222C (en) 2002-11-26
EP0988593A1 (en) 2000-03-29
AU7832498A (en) 1998-12-30
WO1998057263A1 (en) 1998-12-17
US20020029255A1 (en) 2002-03-07

Similar Documents

Publication Publication Date Title
CA2293222A1 (en) System for facilitating drug discovery data and method thereof
EP1254703A3 (en) Matrix storage and dispensing system
AU9486498A (en) Systems and methods for organizing and analyzing information stored on a computer network
FI970288A (en) A computer system with a client-server architecture
EP0605401A3 (en) Parallel computer system using a simd method.
CA2434081A1 (en) Data structures utilizing objects and pointers in the form of a tree structure
CA2185990A1 (en) Document proxy framework
EP0603801A3 (en) Generalized shared memory in a cluster architecture for a computer system.
AU5338998A (en) Data sharing method and computer architecture
EP0633537A3 (en) Method and system for searching compressed data.
MXPA01011691A (en) Information management, retrieval and display system and associated method.
CA2262322A1 (en) System and method for executing a request from a client application
AU7833098A (en) Multiple access computer monitoring system
CA2242516A1 (en) Distributed processing
EP0622930A3 (en) Application sharing for computer collaboration system.
EP0616455A3 (en) Computer network using data compression.
EP1307023A3 (en) A distributed computer system
EP0627689A3 (en) Back-to-back data transfers in a multiplexed bus system.
CA2369108A1 (en) Handling a request for information provided by a network site
EP0633538A3 (en) Relational database management system.
AU8760898A (en) Surfactant-lipase complex immobilized on insoluble matrix
EP0865000A3 (en) Image processing method and apparatus
EP0740258A3 (en) Data management system
EP0617373A3 (en) A method and system for parallel, system managed storage for objects on multiple servers.
WO1997042575A3 (en) System and method for handling technical information

Legal Events

Date Code Title Description
EEER Examination request
MKLA Lapsed
MKLA Lapsed

Effective date: 20050610